Seamless QuickBooks Ecommerce Integration Powered by Webgility
Automate Your E-commerce Workflow and Accelerate Growth
Webgility connects your store directly to QuickBooks Online or Desktop, syncing your sales, inventory, fees, and shipping data—without the manual hassle. Minding My Books helps you take control of your business with Webgility—the leading real-time accounting automation software for online sellers.

What is Webgility?
Webgility is a versatile and powerful eCommerce automation software that connects your QuickBooks account to your online stores, marketplaces, and point-of-sale systems. Whether you are a retailer, manufacturer, or distributor, Webgility automates data entry, syncs transactions, and manages inventory from a centralized dashboard. It’s the smarter way to handle multichannel sales.
Category:
eCommerce
Inventory Management
Data Sync
Point of Sale Solution
QuickBooks Compatibility:
QuickBooks Desktop Enterprise
QuickBooks Online
Networks Cloud Access Level:
Deluxe Cloud Access
Webgility Features & Benefits
Manage your business easily with fewer errors. Automatically sync your orders, customers, sales tax, fees, and more to QuickBooks.
What Makes Webgility the Ultimate Ecommerce Solution?
Data Sync
Keep your business up to date by securely syncing orders, product details, and customer info in real time—no coding needed. Automatically transfer orders, customers, shipping details, fees, and taxes directly into QuickBooks Enterprise and Online.
Inventory Management
Control pricing and stock levels across all sales channels to enhance customer satisfaction. Avoid overstocking, stockouts, and overselling by maintaining accurate real-time inventory.
Accounting Automation
Streamline daily bookkeeping with automated processes that eliminate errors. Save time and reduce workload by letting automation handle tasks that would normally require multiple staff members.
Financial Reporting
Get a comprehensive view of your financial health and profitability all in one dashboard. Use insightful analytics to make informed decisions that drive your business growth.
Order Management
Effortlessly track and manage all your ecommerce orders in one place. Ensure timely fulfillment, reduce errors, and improve customer satisfaction with automated order processing synced to QuickBooks.
Multi-Channel Integration
Connect and unify all your online sales channels—Amazon, Shopify, Walmart, BigCommerce, and more. Centralize your operations and maintain consistent data flow across platforms for seamless e-commerce management.
Why Choose Webgility?
Webgility is more than just a sync tool; it's a complete eCommerce accounting automation platform designed to eliminate repetitive tasks, improve financial visibility, and streamline operations across all your sales channels.
Why businesses trust Webgility, and why Minding My Books recommends it to our U.S. clients
No IT or Coding Skills Required
Webgility is built for business owners, bookkeepers, and accounting teams, not programmers. You don't need to hire an IT professional or write a single line of code. The intuitive setup process guides you step-by-step to connect your eCommerce platforms to QuickBooks, configure your settings, and automate your workflow. You'll be up and running in hours-not days.
Bonus: Our team at Minding My Books offers hands-on setup and ongoing support, so you're never on your own.
Ideal for Growing eCommerce Businesses
Whether you're selling 100 products or 100,000, Webgility is built to scale with your business. It supports multiple stores, multiple users, high transaction volumes, and even multi-location inventory tracking. If you're expanding from Shopify to Amazon or adding Walmart Marketplace to your strategy, Webgility grows with you-without needing a new tool or system.
Who it's best for: Online retailers, wholesalers, manufacturers, and multi-channel sellers aiming for sustainable growth.
Reduces Time Spent on Manual Bookkeeping
Manually entering sales, reconciling fees, updating inventory, and calculating taxes wastes valuable time-and increases the risk of errors. Webgility automatically syncs order data (including shipping, discounts, taxes, and marketplace fees) from your sales channels into QuickBooks with accurate mapping to your accounts, classes, and items.
Result: Save dozens of hours every month, reduce costly mistakes, and keep your books up to date in real time.
Delivers Better Visibility Into Your Profit Margins and Operations
Webgility gives you real-time access to sales trends, channel performance, shipping costs, and net profits-all from a centralized dashboard. It pulls together financial data from QuickBooks and operational data from your eCommerce platforms so you can see exactly where you're making money and where you're losing it.
Features include:
- Channel-level profitability tracking
- Product-level margin analysis
- Custom financial reports
- Alerts for low stock or high fees
Integrates Seamlessly with Shopify, Amazon, Etsy, eBay, Walmart, WooCommerce, and More
Webgility is built for the modern omnichannel seller. Whether you're managing one store or multiple platforms, it ensures your data stays in sync across:
- Shopify - Sync orders, inventory, refunds, and fees with QuickBooks
- Amazon - Map FBA and FBM sales, reconcile payouts and fees
- eBay & Etsy - Keep your QuickBooks updated with all transactions
- Walmart Marketplace - Track marketplace performance and shipping
- WooCommerce - Real-time integration with your WordPress store
- BigCommerce, Magento, Square, ShipStation, and more
No duplicate entries, no missed orders, no inventory confusion-just accurate, automated accounting and inventory management.
Webgility Pricing plans
Choose the features you need, pay only for what you use, and scale effortlessly as you grow. When you work with Minding My Books, you get personalized onboarding, configuration assistance, and QuickBooks integration support every step of the way.
Save 20% with Annual Billing
QuickBooks Online Plan
Essentials
For simple, accurate books
$49/month $24.50/month
Save 50% for 3 months
Plan includes
- 1 sales channel
- 6,000 orders per year
- 3 month look back
Features:
- Summarized sales, refunds, and taxes
- Summarized fees and payouts
- Daily or Payout-based journal entries
- Easy reconciliation
- Daily automa
QuickBooks Online Plan
Pro
Real-time books and inventory
$99/month $49.50/month
Save 50% for 3 months
Plan includes
- 2 sales channels
- 6,000 orders per year
- 3 month look back
Everything in Essentials +
- Track each order, product and customer
- Track individual fees and payouts
- Auto-create products and customers
- Track COGS and Inventory
- Sync Inventory, Price, and Cost
- Advanced Analytics
- Real time automation
- AI Assistant
QuickBooks Desktop Plan
Plus
Accurate books and inventory
$109/month $54.50/month
Save 50% for 3 months
Plan includes
- 12,000 orders per year
- 2 sales channels
- 3 month look back
Features
- Summarized sales, refunds, and taxes
- Summarized fees and payouts
- Auto-create products
- Track COGS and Inventory
- Easy reconciliation
- Daily automation
QuickBooks Desktop Plan
Advanced
Real-time books and inventory
$199/month $99.50/month
Save 50% for 3 months
Plan includes
- 12,000 orders per year
- 2 sales channels
- 3 month look back
Everything in Plus +
- Track each order, product and customer
- Track individual fees and payouts
- Track shipping expenses
- Auto-create customers and products
- Sync Inventory, Price and Cost
- Sync Product Catalog
- Works with bundles and groups items
- Works with QB Enterprise Advanced Inventory Add-on
- Advanced analytics
- Real-time automation
QuickBooks Desktop Plan
Premium
Flexible workflows and scale
$399/month $199.50/month
Save 50% for 3 months
Plan includes
- 12,000 orders per year
- 2 sales channels
- 3 month look back
Everything in Advanced +
- Sync Inventory with flexible rules
- Sync Price with flexible rules
- Sync Customers
- Create Purchase Orders with flexible rules
- Create orders and process payments
- Online data backup
Webgility vs A2X: Which Is Better?
If you’re comparing A2X vs Webgility, here’s what to know:
Webgility offers more robust inventory management and omnichannel support, ideal for businesses with multiple sales channels.
A2X is great for Amazon and Shopify, but doesn’t provide the same depth for inventory or multichannel support.
Webgility is the right choice if you're looking for a QuickBooks-centric solution that scales with your operations.
Webgility and QuickBooks Integrations
If you use QuickBooks for your finances while operating an online store, maintaining precise and current accounting data is essential. Webgility makes it effortless by providing the most advanced and reliable integration with QuickBooks Online and QuickBooks Desktop Enterprise
Why Connect Webgility with QuickBooks?
Ecommerce and QuickBooks Desktop integration
Connect Your Stores, Marketplaces, and POS Seamlessly: Effortlessly integrate Shopify, Amazon, Walmart, eBay, Etsy, Lightspeed, and more with QuickBooks Desktop and Enterprise for centralized sales tracking.
Automate Your Order Management: Automatically post sales, returns, and fees to QuickBooks Desktop in near real-time, reducing manual entry and errors.
Close Your Books Faster: Accurately record income, expenses, and payouts to the correct accounts, making month-end reconciliation quick and hassle-free.
Sync and Automate Product Listings: Keep your product catalog updated across all sales channels and QuickBooks without lifting a finger.
Keep Inventory and Pricing Accurate: Maintain real-time inventory counts and pricing across every platform, fully compatible with QuickBooks Enterprise Advanced Inventory.
Streamline Purchasing Workflows: Automatically generate purchase orders for your vendors directly within QuickBooks Desktop to simplify restocking.
Ecommerce and QuickBooks Online integration
Connect Your Stores, Marketplaces, and POS Effortlessly: Seamlessly integrate Shopify, Amazon, Walmart, eBay, Etsy, Lightspeed, and more with QuickBooks Online for a unified view of your sales.
Eliminate Manual Data Entry: Automatically and securely sync your ecommerce and accounting data across all sales channels to save time and reduce errors.
Prevent Overselling Inventory: Manage pricing and inventory levels consistently across your sales channels and accounting platform from a single dashboard.
Optimize Ecommerce Operations: Integrate key tools such as point of sale and shipping systems directly with your stores and QuickBooks Online for smooth workflows.
Keep Books Up to Date: Transactions and payouts sync in real time, ensuring your financial records are always current.
Collaborate Seamlessly: Easily share your QuickBooks Online account access with your bookkeeper, accountant, or outsourced team to streamline collaboration.
Webgility Frequently Asked Questions
What is Webgility, and how does it work with QuickBooks?
Webgility is a powerful e-commerce automation platform that connects your online stores and marketplaces directly with QuickBooks Desktop, Enterprise, and Online. It automatically syncs your sales, fees, orders, inventory, and customer data to streamline accounting and save you valuable time.
Does Webgility support QuickBooks Desktop, Enterprise, and Online?
Yes, Webgility supports seamless integration with QuickBooks Desktop, QuickBooks Enterprise, and QuickBooks Online, allowing you to automate ecommerce accounting no matter which QuickBooks version you use.
Which e-commerce platforms can I connect to Webgility?
Webgility integrates with all the popular platforms including Shopify, Amazon, Walmart, eBay, Etsy, BigCommerce, Lightspeed, Square POS, Magento, WooCommerce, and many more, centralizing your ecommerce accounting efforts.
How often does Webgility sync data between e-commerce stores and QuickBooks?
Webgility syncs your data in near real-time or on scheduled intervals based on your preferences, keeping your books accurate and up to date without any manual entry.
Can Webgility handle multi-location inventory management with QuickBooks Enterprise?
Absolutely, Webgility supports advanced inventory management including multi-location tracking when used alongside QuickBooks Enterprise Advanced Inventory.
Does Webgility automate sales tax and fee calculations?
Yes, Webgility automatically calculates and syncs sales tax, shipping fees, and marketplace fees into QuickBooks, reducing errors and simplifying reconciliation.
Is Webgility secure and compliant with data privacy standards?
Webgility uses industry-leading encryption and security protocols to protect your data and complies with relevant privacy regulations to keep your business and customer information safe.
Can I share access with my accountant or bookkeeper?
Absolutely! Webgility makes collaboration easy by allowing you to share account access with your accountant, bookkeeper, or outsourced finance team.
How much does Webgility cost?
Webgility offers flexible pricing plans based on your order volume and feature needs. Visit the official Webgility pricing page or contact us directly for a custom quote.
What is the difference between Webgility and A2X?
While both automate ecommerce accounting, Webgility supports broader automation and multi-channel integration with QuickBooks Desktop and Online, whereas A2X mainly focuses on Amazon and Shopify sales to QuickBooks Online or Xero.
How do I set up Webgility with QuickBooks Desktop or Online?
Setup is straightforward and user-friendly. Simply connect your ecommerce platforms, configure your QuickBooks company file, and Webgility automatically handles syncing your data. Support resources are available if you need help.
Can Webgility automate purchase orders and vendor workflows?
Yes, Webgility can automatically generate purchase orders for your vendors within QuickBooks Desktop to streamline your restocking and purchasing processes.
Does Webgility support returns and refunds synchronization?
Webgility accurately tracks and syncs returns, refunds, and adjustments in QuickBooks to ensure your financial records remain consistent.
Can I customize how data is mapped between Webgility and QuickBooks?
Yes, Webgility offers flexible data mapping options, allowing you to customize account codes, product categories, and tax rules to match your unique accounting requirements.
What kind of reporting does Webgility offer?
Webgility provides actionable financial and operational reports, including sales performance, profit margins, and inventory status to help you make informed business decisions.
Ready to Automate Your eCommerce Accounting?
Tired of spending hours reconciling sales, tracking inventory manually, or correcting accounting errors from your online stores? Let Minding My Books help you take the guesswork out of eCommerce bookkeeping with Webgility + QuickBooks integration—designed specifically for growing online businesses like yours.
Whether you're using QuickBooks Online for cloud convenience or QuickBooks Desktop for advanced inventory and reporting features, we’ll configure Webgility to fit your unique setup.
Contact us today to schedule a Free Consultation and Get Custom Pricing to See How Webgility Fits Your Business—No Hidden Fees, No Pressure.